PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009107062.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 335aa    MW: 36763.3 Da    PI: 6.8085
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009107062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.82.2e-1675161186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ +++Liea  e+ ++ ++g lk+++W+ev++++   r+ ++ ++ +qCk++++ ++k+yk++k+   ++  +  s++ +f++le
  XP_009107062.1  75 CWSEEATKVLIEAWGERFSEPGKGTLKQQQWKEVAEVVnesRQCKYLKTDVQCKNRIDTVKKKYKQEKAKIASG--DGPSKWLFFKKLE 161
                     7*************************************988888999*************************98..56668******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2374163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDEEDETRSP KSPGDSLSPA PSSPPPILPT SDVTVASATK PPQSLALVVH TPSVVGGSRN  60
GRSGGGGGGG GRDDCWSEEA TKVLIEAWGE RFSEPGKGTL KQQQWKEVAE VVNESRQCKY  120
LKTDVQCKNR IDTVKKKYKQ EKAKIASGDG PSKWLFFKKL ESLIGGAGGN NTKAPLGRRQ  180
GNKGTVLKRG SDSMRWHFRK RSASETESES DPEPEPEPEP EHSPPDSAES LPPPPPPSQL  240
VSKRLKMDEL GGSGVGDVAK AILGFTEAYE KAETAKLKLM MELEKERMKF VKEMELQRMQ  300
FLKTQMEMTQ NDREEERSKP RINDDDVKNN GDVSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187200KRGSDSMRWHFRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.61580.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107062.10.0PREDICTED: trihelix transcription factor GTL1-like
SwissprotQ9SYG21e-128ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLM4DD030.0M4DD03_BRARP; Uncharacterized protein
STRINGBra014370.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.16e-996B-interacting protein 1-like 1